PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000274.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 463aa    MW: 53217.1 Da    PI: 6.3632
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000274.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-05123147123
                              EEETTTTEEESSHHHHHHHHHH..T CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                              y+C+ Cgk ++++  + +H+++  H
  Itr_sc000274.1_g00010.1 123 YTCGVCGKEYRSSQAYSQHLKSksH 147
                              9*******************98666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.0011135IPR003604Zinc finger, U1-type
SuperFamilySSF576671.76E-5335No hitNo description
SMARTSM0035545428IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280628IPR007087Zinc finger, C2H2
SMARTSM004517120154IPR003604Zinc finger, U1-type
SuperFamilySSF576671.31E-5122153No hitNo description
SMARTSM003550.031123147IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.556123152IPR007087Zinc finger, C2H2
PfamPF121711.3E-5123147IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280125147IPR007087Zinc finger, C2H2
SuperFamilySSF576671.73E-9216268No hitNo description
SMARTSM00355280230253IPR015880Zinc finger, C2H2-like
PfamPF127561.3E-24232333IPR015880Zinc finger, C2H2-like
SMARTSM0035534281308IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MPGLTCNACN KEFIDDAEQK LHYKSEWHRY NLKRKDELVK WQGTSCRCIC RLRCTQADND  60
QKFLYYSIKH IKFTVCSSYF YSRQCVQCKL VAGVPGVTEA LFLARQSVLA EENKKLTETP  120
MLYTCGVCGK EYRSSQAYSQ HLKSKSHLLK ASQEPNHNGE NRAIIRPLQR PILDRSTQQV  180
EEDVDESEES EWEEVDEEDM AEATDSLMHT SNENMQDADM DDYSVEVDPS CCFMCDLKHR  240
TIESCMVHMH KQHGFFIPDV EYLKDPKGFL TYVGLKVKRD YLCLYCNDRC HPFSSLEGVR  300
KHMEAKSHCK VHYGDGGDDE EAELEEFYDY SSSYVDANGK ELVASGDTSS GVELGSGGAE  360
LIIKKRTDDG VSTITLGSRE FLRYYRQKLR PTRTNDIALS AALASRYRSM GLATVQSREN  420
MVKMKVMKAM NRSGHEAMRT KIECFQRLEP DLRLHSSWET CRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5apn_y5e-22225391178349Cytoplasmic 60S subunit biogenesis factor REI
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769243.10.0PREDICTED: LOW QUALITY PROTEIN: cytoplasmic 60S subunit biogenesis factor SPCC550.15c
SwissprotQ9ZQ181e-146REIL2_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 2
TrEMBLK4DHB80.0K4DHB8_SOLLC; Uncharacterized protein
STRINGSolyc12g096450.1.10.0(Solanum lycopersicum)